rs27692915 SNP Detail

Summary

• ID
  rs27692915
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180877460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGCCTCC CTGTTAGGCC
  AGCCTCTGGC CCACATTTCT GTCACCTACC TGGCAGGATC TCAAAGCTGC CCACAGACAC
  CTCACCAAGG TTCCTCCTTC TTAGCTCCTG TCTCAGCGCA CTAACCTGCA GACAAGTCCA
  GGGTTCTAGG GGCCTGTCAC CCAGTAAGGA ACAGGCCCTC CTGCCAATCC CTCACCCTCA
  Y
  CCTCACGGTC ATATGGATCA GCTTGGAAAG GAACAAAGCA GCCTTCACAG ATAAAGAAAG
  GAAAGGCCAG AGGAGACAGC TCACCTGGGC ACCATGAGAG ACAGCACAGA TGTGTCTCTG
  CTCCCGGGGT CCCCAGCAGT GAGGCCAGGT GTTATAGATC TCCCGCACCT TCTCCACCAC
  CTGGGTGACC TCAGCCGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37832201	NES08675677	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27692915					SNP	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37832201	NES08675677	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180877460 () rs orientation: forward

Symbol	Name	Function Class
Helz2	helicase with zinc finger 2, transcriptional coactivator	within coordinates
Rr41658	regulatory region 41658	141 bp proximal
Tssr28190	transcription start site region 28190	1539 bp upstream
Tssr28191	transcription start site region 28191	452 bp downstream
Tssr28192	transcription start site region 28192	562 bp downstream
Tssr28193	transcription start site region 28193	1899 bp downstream