rs27692918 SNP Detail

Summary

• ID
  rs27692918
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180875549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAGTCCA GGTGGGCTGG
  AAGCTCCAGG CCAGCCCCAG GGTGTCTCTT GATCAGTTCT TCGGCTTCCT CATACGACAG
  CTGGCGGTCA GAGCGGATTA TGGAGGGTGC AAATCGCAGG CTCTTGATCT GGCCACCACC
  TTTCTCCATG GTGAGGAAGA GAGAGATGGC GAGGCGATCC TGACCAGGGA GAAGGCTGAG
  Y
  GCATCCTGGC ACAAGCTGGC GGGCAGCATG AGTACTGGCT CCCTATTGGG GGCATAGAAC
  ACAGTTCCCT GCTGGCGGGC TTCCACGTCC AGGGCCCCAT CCTTGGGCAC CAAGCTGGCC
  ACATCAGCAA TATGCACTGC CACCTCGTAC ACTGGGCCTA GGTCTCGGAC ACTAAGAGCG
  TCGTCAAGGT TGCAGGCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37832204	NES08675672	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T	T	C		T	T	C	T
ss148398968	ENSMUSSNP5095722	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27692918					SNP	T	T	T	T	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37832204	NES08675672	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180875549 () rs orientation: forward

Symbol	Name	Function Class
Helz2	helicase with zinc finger 2, transcriptional coactivator	within coordinates
Rr60511	regulatory region 60511	1550 bp distal
Tssr28190	transcription start site region 28190	326 bp downstream