rs27693041 SNP Detail

Summary

• ID
  rs27693041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180847292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGAAGCTG AAGAGTCTTC TGGCTTCAAT TCCAGGCCAG
  GGAGGGGGAA AGGACTGCTC ACTTAGATCT AGCAGTGTTC ACCATGAATG CCTCGGTGTC
  Y
  TCTCTCTCTC TCTCTCTCCA CCGTGTTCCA GAGCCTCCAG CATTGCATTC TGGGAACCAG
  AATGTGAAAC CACCAGAACA TGTTTATTGA AGCTGACTTT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37832329	NES08676096	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27693041					SNP	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37832329	NES08676096	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180847292 () rs orientation: forward

Symbol	Name	Function Class
Gm40033	predicted gene, 40033	849 bp upstream
Gm74821	predicted gene, 74821	720 bp downstream
Ptk6	PTK6 protein tyrosine kinase 6	1884 bp upstream
Srms	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	64 bp downstream