rs27693043 SNP Detail

Summary

• ID
  rs27693043
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180847082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCCCCAT CACCCTGCCC
  CCTAAGATTG ATGCCCCTAA GTACCCTGAA GTGTTGAGTG ATCTGAGGCC CAACTCCTCA
  AGGTGTTACC CTTAAAAAGT GGTCCATGGG GGCTTTGCCC CAGAGAGGAT CTGGTTGCCA
  ACACCCTCCC TTTGGCTGAC TAGATACCCT ATATCTGCCT AATCCCACCA ACCAGAAAAG
  Y
  CTGCCTTCTA ACCACTGCCT ATCACCCAAA GAGATATTCT CAAAACAACA TTCCTCTGCA
  TCTAGAAAGG GCCTGGGCGT GCTGACTACC AAATAGCCAG TCTGCCCTTC CTGAAGCTGA
  AGAGTCTTCT GGCTTCAATT CCAGGCCAGG GAGGGGGAAA GGACTGCTCA CTTAGATCTA
  GCAGTGTTCA CCATGAATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37832331	NES08676094	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27693043					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37832331	NES08676094	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180847082 () rs orientation: forward

Symbol	Name	Function Class
Gm40033	predicted gene, 40033	1059 bp upstream
Gm74821	predicted gene, 74821	510 bp downstream
Ptk6	PTK6 protein tyrosine kinase 6	1674 bp upstream
Srms	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	274 bp downstream