rs27693047 SNP Detail

Summary

• ID
  rs27693047
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180846295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGCCAAAC CTGCTCATCT TTGGCTGACT AGATACCCAG
  GAATGTGCCA GGATCCAGTC AAACCAGCTT CCATGGCTTG ACTACAATTC CGGCACCATC
  Y
  TTCTCTCCAG GCTGTGCCAT CCTTTCCCTA GAGCCCTCAT GACTCATGGT AGCCCCTTAA
  CATCAGAATA CTATCATCTT ATGCCATGCA AGCCCTTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37832336	NES08676088	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T		C	C	T	C	C	T	T	C	T
ss45205064	mCV22913149	ABI	CRAMUS_MOUSE	f	SNP	T	T	C				T		C
ss148398689	ENSMUSSNP5990961	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27693047					SNP	T	T	C	C	T	T	T	C	C	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37832336	NES08676088	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180846295 () rs orientation: forward

Symbol	Name	Function Class
Gm40033	predicted gene, 40033	1846 bp upstream
Gm74821	predicted gene, 74821	within coordinates
Ptk6	PTK6 protein tyrosine kinase 6	887 bp upstream
Rr572948	regulatory region 572948	1223 bp distal
Srms	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	1061 bp downstream
Tssr28184	transcription start site region 28184	1968 bp upstream
Tssr28185	transcription start site region 28185	1939 bp upstream