rs27693049 SNP Detail

Summary

• ID
  rs27693049
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180846062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCCAGGGA GGTGAGGGGA AGGGTGATGG ATATGGGAAG
  AGGAGAGGGA TAAGGATTGC TAATGGTAGA GGCCAGCCTC TACAGTTGCC TTCCCGGTTC
  R
  CTCAGGGTCC TCAAGTCTCG AGCCTCTAGG CTCAAGCTAT GTCCTGGACA GCCACGTGTC
  CCTAAATGAG ACCCGTGGGC AGCTCTATTG ATGATACAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37832338	NES08676084	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	G	G		G		G	G	G	G	G	A	G
ss45220749	mCV22913147	ABI	CRAMUS_MOUSE	f	SNP		A					G		A
ss148398678	ENSMUSSNP6962875	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27693049					SNP	G	A	A	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37832338	NES08676084	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180846062 () rs orientation: forward

Symbol	Name	Function Class
Gm74821	predicted gene, 74821	within coordinates
Ptk6	PTK6 protein tyrosine kinase 6	654 bp upstream
Rr572948	regulatory region 572948	990 bp distal
Srms	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	1294 bp downstream
Tssr28184	transcription start site region 28184	1735 bp upstream
Tssr28185	transcription start site region 28185	1706 bp upstream