rs27693363 SNP Detail

Summary

• ID
  rs27693363
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:5536333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTATTTCC CTACATTGCC
  TAGAACTCGG TGATGCCATA TTTTCACGTG TAAATTTCTG ACATATTTCT AATTTATCTA
  GATATTGATA CAAAGACCTT TCTGTAGAGA CTGCACTTTA GAAATTCCAG CCTCCTAGAC
  TGGAAGTCTA GGAATTATTT CTGTAACATG TTGCCTGTGT TATACCGTGA CATGTCATTA
  Y
  GTACAGGAAT CTATCCCTAG AGTTTCCATT TGGTTTTCTA TATGAGCTGG TACAGAACGC
  TAGTTACAAC ACTGGCTTTA CTGTCTTCTC TTAGGTTGGG AAAAGCACAG GGATTCTTCT
  TTTTCATTTT TCTGTAAAGG AAAGAGGACA AATAGCTACA AAGTATCCTA TGCAGATCAC
  AGTGGATATG CAAGACATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37870187	NES08675707	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	T	T		T	T	C	T
ss145954770	ENSMUSSNP2426977	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27693363					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37870187	NES08675707	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:5536333 () rs orientation: forward

Symbol	Name	Function Class
Tssr36375	transcription start site region 36375	488 bp upstream