rs27693368 SNP Detail

Summary

• ID
  rs27693368
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:5535408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTAGAGGT GAATGAAGCA
  GTGAGGACTT CATTGTGAGT TCAAGGTTAG TATGCAAAAC AAAGAGAAAA GGAAATAGGA
  CAAAGGAGGA TGCTATGGTG GTAAGCCAAT GATAAGGGAG TTTTTCTAAC TGTAGAAGTG
  GTCAGCAGTA AGATGCCTGG CCACTATAGG TCAGCCAATA ATAAAGCAGT TTTTCTAACT
  R
  TAGAGGTGGT CAGCAGCATG ATGGATGACA ACTGTAGGTC AGCGATGGAT ATTTACACTT
  GGGGAAGATT GAAATAAAAG AAGCTTCACT GGGCTTCCTT GTTATGTTTT ATGCCAAGGA
  GTTAAGCCCA GTGTAGACCA TAGTTCCTAA GCCAGGTAAC TGTGATCCCA TGAACAGGTT
  TTCCCCTGGG CCAAAAACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37870192	NES08675734	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27693368					SNP	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37870192	NES08675734	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:5535408 () rs orientation: forward

Symbol	Name	Function Class
Tssr36375	transcription start site region 36375	1413 bp upstream