rs27694985 SNP Detail

Summary

• ID
  rs27694985
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19124362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATTCAGT TAGGCAAGTA
  TCATTTGTTA AAGATGCTCT CCCTTTTTCC ATGGTATAGT TCTGACTTTT TTATCAAAAA
  TCAGATGTCC ATAAGTATAT GGGTTTATTT CGGGGTCTTT GATATGGTTC CATTGACCAA
  CCTGTCTATT TCTATACCAA AACCATACAG TTTTTATTGC TATTGCTCTG TAGTACAGTA
  Y
  ACTTTAATAA TGGAAGATAG ATGTTCATAA TAATCCTAAT ATTATCAATA CAGATTATTA
  TAAATAGTCA CATCTCAGAT GACATCAGCT GATCACAAGA ATAATTAAAC TTTTATTCGA
  GAAAGCCACT GGTTCCAGAA AGCCTTGTCT CATGTGCTAG CATGGTAGCT CCATGCCAGC
  TTTCTGATAA ATCTATTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37880006	NES08630829	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27694985					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37880006	NES08630829	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19124362 () rs orientation: forward

Symbol	Name	Function Class
Cnbd1	cyclic nucleotide binding domain containing 1	1812 bp upstream
Gm42258	predicted gene, 42258	within coordinates
Tssr1124	transcription start site region 1124	1720 bp downstream
Tssr36571	transcription start site region 36571	1681 bp downstream
Tssr40994	transcription start site region 40994	1838 bp upstream
Tssr40995	transcription start site region 40995	1831 bp upstream
Tssr40996	transcription start site region 40996	1807 bp upstream