rs27694987 SNP Detail

Summary

• ID
  rs27694987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19122410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAATGGTT GAAATAGCCT
  CATATCGTAA TGCCAGGCTT GTACAACTAT GTCTCTCCAT TACTAGGCTA TAATGTGCTA
  TAAGTACCTC TGTGTTCCCA CTGACTCTCA AATGCCTGTT GCTTACAACA AACCAAGTAC
  CGTTGGAAAC AACAACGAAG GCATGGGCCT TCATAAAAGT GTCACTTACG TGGCAAACTG
  Y
  GAAGTGGAGG AGGAGGCACA TTGCTAATGG CTAACATGTG GGCCAAAATA CTGTTTGGAA
  GAGAATCCAC AGGCATCTTG TCATCTTATA AGGCAGGTGG ATAGAGACTA CTTGAGTGTT
  AGAGGAACAT ACTTATCTTT GGAACATGAC ACATTAGAAC CCTCAAGAAC CTTCATGGTC
  CACTCTGATA GGCCAAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37880008	NES08630862	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27694987					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37880008	NES08630862	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19122410 () rs orientation: forward

Symbol	Name	Function Class
Cnbd1	cyclic nucleotide binding domain containing 1	within coordinates
Gm42258	predicted gene, 42258	226 bp upstream
Tssr1124	transcription start site region 1124	223 bp upstream
Tssr36571	transcription start site region 36571	243 bp upstream
Tssr40994	transcription start site region 40994	101 bp downstream
Tssr40995	transcription start site region 40995	118 bp downstream
Tssr40996	transcription start site region 40996	126 bp downstream