rs27694988 SNP Detail

Summary

• ID
  rs27694988
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19121989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATACTACCC TAGTACAACA
  TCCTGGGCTT ACATTGACTG ACTACACAGA ATAAATACTG TTCAATGTAT AATTTTCAAA
  ATATTTAATT CTGTATTTAT AACACCTATG AGCTAAAAAA ATCAAAAGCT AGAACATGAA
  AGAAAAATAG GAATATATTT CAGTCAGAAT AATCGAATTA CTTTTTCCCC TTTCAAACTT
  W
  AAGTGAGAAA TCCCTATGGA AAATACACTC ATAGAAGTAG GACCAACTCG TAGTAGACAT
  GATGAGGTTT TCCAGAAACA CTTGTCTGTA GTTCCCTGGA ATATCACAAG GAATCTCTCT
  TCCTTCAAGG TATTTTGATA TTTATATATA ATAAGAGCAT TGTTGAAGCT CCAAGAACTT
  ATCAAGATCC CGATTTTACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37880009	NES08630861	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27694988					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37880009	NES08630861	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19121989 () rs orientation: forward

Symbol	Name	Function Class
Cnbd1	cyclic nucleotide binding domain containing 1	within coordinates
Gm42258	predicted gene, 42258	647 bp upstream
Tssr1124	transcription start site region 1124	644 bp upstream
Tssr36571	transcription start site region 36571	664 bp upstream
Tssr40994	transcription start site region 40994	522 bp downstream
Tssr40995	transcription start site region 40995	539 bp downstream
Tssr40996	transcription start site region 40996	547 bp downstream