rs27694991 SNP Detail

Summary

• ID
  rs27694991
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19121353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGTAGCA CACATCTCAT
  CCCATTGATT CTAAATTAAT TTGATCTTTT AACTCCCAGC TATTACACTT CCTGAATTGA
  TAAAAAAAAA AAAAAAGTCC CGGGGTAACT TATTTTTCCA CAAATAAAAT CTGACAGTAG
  TGGGTTTGAA GCAAAATTAT TTGAATAACT ATTGCCACTT AAATAGAAAT AGAAAAGTTT
  R
  TGGTAAACAT ACTATTTTGA AAATCGCTTT TGGACTTAAC TTCATTTGGT AAAAAAGTAT
  AAAATATTTT TATTGGAATA AATATTCAAA GTAACAATTA ATAATTATAG TTTGTATGAT
  ATGTATTTAA TATTTTATGT GTATCTAGAT GTATTTTACA TACACACAAA TACATAATAT
  ATTTCTTCAA AAGGCATAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37880012	NES08630858	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27694991					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37880012	NES08630858	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19121353 () rs orientation: forward

Symbol	Name	Function Class
Cnbd1	cyclic nucleotide binding domain containing 1	within coordinates
Gm42258	predicted gene, 42258	1283 bp upstream
Tssr1124	transcription start site region 1124	1280 bp upstream
Tssr36571	transcription start site region 36571	1300 bp upstream
Tssr40994	transcription start site region 40994	1158 bp downstream
Tssr40995	transcription start site region 40995	1175 bp downstream
Tssr40996	transcription start site region 40996	1183 bp downstream