rs27704306 SNP Detail

Summary

• ID
  rs27704306
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9504007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATT TTAAAAGGTC ACTCCATGTA
  Y
  GATATTAATA TTTCTGCAAG CTAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37856343	NES08654620	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T		C		T		C	C	C		C
ss45636840	mCV23775697	ABI	CRAMUS_MOUSE	f	SNP		T	C				C		T
ss145987039	ENSMUSSNP3907395	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss321038833	CHEV_4_9431154	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27704306					SNP	T	T	C	C	T	T	C	C	T	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37856343	NES08654620	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9504007 () rs orientation: forward

Symbol	Name	Function Class
Asph	aspartate-beta-hydroxylase	within coordinates
Cpgi14017	CpG island 14017	1146 bp distal