rs27704308 SNP Detail

Summary

• ID
  rs27704308
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9503509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTAAACT GGCCATGATC
  AAACTGCTAA TCTCAACAAG TTGCTAATCT CAGAGAGTGG GGTACAAGTA ATGTTTTCTA
  TTTTCAACCT ACGAAAGGGA TTATTAGTCC ATTTTTATAT AAATTTTTAA GCTAAATGTC
  TCTCAGGAAT TTGGCACTCT GATATTTCTG AACGATATGC AACAACCTGC CAACTTTAAT
  R
  GAAATATATC CCAAAGAGAA AATACTGTTG TTAACACTTT CTTTGCTTCT TCCATCTAGA
  TTTATAAACC CAGTGTCACA GCACCTGAAT TATAGGCTCC ACAGTAAAGG TCAACGAGTC
  AACAAAATGG GGCTGTAACT CAGGGCTGCA CTTCCCTTCG CTTCATCTCA ACCAGCAAGG
  AAATGTTCCT CTGTCTCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37856345	NES08654615	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27704308					SNP	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37856345	NES08654615	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9503509 () rs orientation: forward

Symbol	Name	Function Class
Asph	aspartate-beta-hydroxylase	within coordinates
Cpgi14017	CpG island 14017	648 bp distal