rs27704317 SNP Detail

Summary

• ID
  rs27704317
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9502028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTTTCCG TTCTTCTTCC
  CAATGCGTGT AGATGAAATC TCTCAGTATC TCATTCTTAA TTGGCTCTTT AGTTGGGGTG
  TTAGAAGCTG TGGTTGAGCC TAGCCCTCTG TGACTTTTGC AGGCTGGCCT TTTTGGTGTA
  CAGCTCCAGT TAGTCTTAGG ACAGAGGGAC ATCTAAACTG CACCAGGGAC ATCCTAGGCC
  R
  TGGGTTTCCT TGTTTTATGT TTTGAGTCTC AACAAAACCT TGCAAGAAAG GAGTAGTTAT
  TTTGAATTTA GAGATGAAGC AGTCTCAGCT GAATGCAGTT ACTTCTCTGG AGTGCCAGAG
  ACCAAACATT TCTCTGTCTC TAACAGGGGG CCTCCTCCTA CAAGGCTCAC TTTTAAGCAC
  ATGGCTCTCA GTCATTCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37856354	NES08654605	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27704317					SNP	A	A	A	A	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37856354	NES08654605	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9502028 () rs orientation: forward

Symbol	Name	Function Class
Asph	aspartate-beta-hydroxylase	within coordinates
Cpgi14017	CpG island 14017	591 bp proximal