rs27704319 SNP Detail

Summary

• ID
  rs27704319
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9501936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACATCTA CACATAGGTA
  TGTAAGTCAC TCAATAAGAG TCTACCTAAG CTCATGTCAG GACCCCAAGG ATAAAACCTG
  GAGACCCCAG ACCCTTTTTC CGTTCTTCTT CCCAATGCGT GTAGATGAAA TCTCTCAGTA
  TCTCATTCTT AATTGGCTCT TTAGTTGGGG TGTTAGAAGC TGTGGTTGAG CCTAGCCCTC
  K
  GTGACTTTTG CAGGCTGGCC TTTTTGGTGT ACAGCTCCAG TTAGTCTTAG GACAGAGGGA
  CATCTAAACT GCACCAGGGA CATCCTAGGC CATGGGTTTC CTTGTTTTAT GTTTTGAGTC
  TCAACAAAAC CTTGCAAGAA AGGAGTAGTT ATTTTGAATT TAGAGATGAA GCAGTCTCAG
  CTGAATGCAG TTACTTCTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37856356	NES08654603	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27704319					SNP	T	T	T	T	T	T	G	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37856356	NES08654603	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9501936 () rs orientation: forward

Symbol	Name	Function Class
Asph	aspartate-beta-hydroxylase	within coordinates
Cpgi14017	CpG island 14017	683 bp proximal