rs27704323 SNP Detail

Summary

• ID
  rs27704323
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9501277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTCTAGA TTGTTGCCAA
  ACATAGGAGT GTGGTCTTCT GCAAGTCTAA TTTATACTGA GCTGCTCTCA TTGGCTGGTT
  ACTTTAGTGA GGCTGGCTTG CCAGGCAGGC TCTTGTAGGC CTCAGGATCA CAGCTATACT
  GGTCTGGAAT TTAGTCTTTG GGCCTTTGTA TTTGACATAT TACCCCCATT TGAGGGCTAT
  W
  GGGACTTCGA GGGTAAATGA GACATCTGAA CATATGCATG GGCATATGTA CATTCAAGAT
  GTTGATCTTT ACATATGTAT ATCAAGCCAT AGAGCATGAA CTTCTGGCTT AAGCATTTTT
  AAACCTAAAA TGAAATATGA ACCATAGACA ATCATTCTGA CACATCAAAT GCTGCACTGT
  GTTCCTCAAA AGCACTTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37856360	NES08654599	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27704323					SNP	T	T	T	T	T	T	A	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37856360	NES08654599	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9501277 () rs orientation: forward

Symbol	Name	Function Class
Asph	aspartate-beta-hydroxylase	within coordinates
Cpgi14017	CpG island 14017	1342 bp proximal