rs27704870 SNP Detail

Summary

• ID
  rs27704870
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19875290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATATTAT AGGGTAACTG
  AGGGACAGAG GAACAGAGGA ACACTTGATG AAGTGGAGAA AAAATGATGG TGATGGTAAA
  ATGGATGAGG AGGGAGAAGG TGTGAATAGT CTGCAGTAGA TATGTATGGG TGGTTGGACT
  GGCTAATGAC TGGAAGGAAT CTGGGGTGTG GATCTCACTA AACTATACTG CTCCAAGATG
  R
  AATACAACAA TAATAGAGAT GGAAACGGAA AGTTAATGAG TGTTGGGAGA AATAAGGGGA
  AAAGAATGGT GGAGGTGTCA GCTTCAAAGA CAATGACTCA GGATTACTGG CATCTGTTTC
  TAACCTGGAT ACTATGAGCC AAAGGCAGGA AGATCAAGGG CAAGCCTTGG CTACACATCA
  AGGCAGTCTC TACACAACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37877994	NES08629739	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27704870					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37877994	NES08629739	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19875290 () rs orientation: forward

Symbol	Name	Function Class
Atp6v0d2	ATPase, H+ transporting, lysosomal V0 subunit D2	1548 bp downstream
Gm68467	predicted gene, 68467	681 bp upstream
Tssr41030	transcription start site region 41030	1839 bp downstream
Tssr41031	transcription start site region 41031	1904 bp downstream
Tssr41032	transcription start site region 41032	1921 bp downstream
Tssr41033	transcription start site region 41033	1960 bp downstream