rs27715284 SNP Detail

Summary

• ID
  rs27715284
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:11706819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGC TTCCACTAAC ATTAGAAGCA
  Y
  TTGCAAGTGT AAGTAGGTCA AATGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ
ss37902608	NES08655348	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	T		T	T	C	T	T
ss45598141	mCV23761791	ABI	CRAMUS_MOUSE	f	SNP		C					T		T
ss146016574	ENSMUSSNP7002874	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ
rs27715284					SNP	T	C	T	T	C	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37902608	NES08655348	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:11706819 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14039	CpG island 14039	1875 bp distal
Gem	GTP binding protein overexpressed in skeletal muscle	within coordinates
Gm69323	predicted gene, 69323	1895 bp upstream
Rr588976	regulatory region 588976	1906 bp distal
Rr588977	regulatory region 588977	1405 bp distal