rs27715286 SNP Detail

Summary

• ID
  rs27715286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:11706737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACAGAGG CCTAACTGCT
  GGCACAAAGC CTCAAGCACA AAAAAAGACA AGACAGGAGG AATACATGTA CGCAGGACCA
  AATCTGTTGA CCCAAGTTAT CAAGGGGCTT TCTGAAGGTC AGGTCTGAGG GGTCCAAGAA
  GGCTGACTTG ACCCTGGACT GGTTTTGGAG AGTTCACTAC TGGAACGTTT TCTGTGACTA
  Y
  GCATAAAACC GAACCGATTT GGAAGGGAAA GAAACCTGCT AGAGTGGATC GATTAGTGTG
  CTTCCACTAA CATTAGAAGC ATTTGCAAGT GTAAGTAGGT CAAATGCTGT ACTTGAAGTA
  GCATAATAAC TTAAAAAACT GAGCTATGAA GATGGTGATA AATGCCCTGC ATAGAGCCTG
  ACAGGTCTCC AGATGATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37902610	NES08655346	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27715286					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37902610	NES08655346	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:11706737 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14039	CpG island 14039	1793 bp distal
Gem	GTP binding protein overexpressed in skeletal muscle	within coordinates
Gm69323	predicted gene, 69323	1813 bp upstream
Rr588976	regulatory region 588976	1824 bp distal
Rr588977	regulatory region 588977	1323 bp distal