rs27715288 SNP Detail

Summary

• ID
  rs27715288
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:11706534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGGTACA CACTTGCAAT
  CCCAGCACCA GGAAGGAAGA AGCAGAAGGG CTAGGAACTC AAGGTCATCT TCAGATACAA
  AAAGAGTTTG AGGCTAACCT GGGCTATGTG ATTCTGTCTC AAAAAAAAAA AAAAAAAACA
  ACAAATTGAA ACAAAATGTA TCTTTAGGAT TAGGAGAACC TATACCTTCT CAATACTGAG
  R
  TGGTGACAGA GGCCTAACTG CTGGCACAAA GCCTCAAGCA CAAAAAAAGA CAAGACAGGA
  GGAATACATG TACGCAGGAC CAAATCTGTT GACCCAAGTT ATCAAGGGGC TTTCTGAAGG
  TCAGGTCTGA GGGGTCCAAG AAGGCTGACT TGACCCTGGA CTGGTTTTGG AGAGTTCACT
  ACTGGAACGT TTTCTGTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37902612	NES08655342	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27715288					SNP	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37902612	NES08655342	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:11706534 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14039	CpG island 14039	1590 bp distal
Gem	GTP binding protein overexpressed in skeletal muscle	Intron
Gm69323	predicted gene, 69323	1610 bp upstream
Rr588976	regulatory region 588976	1621 bp distal
Rr588977	regulatory region 588977	1120 bp distal