rs27715289 SNP Detail

Summary

• ID
  rs27715289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:11706498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGTCATT TTTTCTGCAG
  AATTGGGAGC CAGGCATAAT GGTACACACT TGCAATCCCA GCACCAGGAA GGAAGAAGCA
  GAAGGGCTAG GAACTCAAGG TCATCTTCAG ATACAAAAAG AGTTTGAGGC TAACCTGGGC
  TATGTGATTC TGTCTCAAAA AAAAAAAAAA AAAACAACAA ATTGAAACAA AATGTATCTT
  Y
  AGGATTAGGA GAACCTATAC CTTCTCAATA CTGAGATGGT GACAGAGGCC TAACTGCTGG
  CACAAAGCCT CAAGCACAAA AAAAGACAAG ACAGGAGGAA TACATGTACG CAGGACCAAA
  TCTGTTGACC CAAGTTATCA AGGGGCTTTC TGAAGGTCAG GTCTGAGGGG TCCAAGAAGG
  CTGACTTGAC CCTGGACTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37902613	NES08655340	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27715289					SNP	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37902613	NES08655340	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:11706498 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14039	CpG island 14039	1554 bp distal
Gem	GTP binding protein overexpressed in skeletal muscle	within coordinates
Gm69323	predicted gene, 69323	1574 bp upstream
Rr398169	regulatory region 398169	1979 bp downstream
Rr588976	regulatory region 588976	1585 bp distal
Rr588977	regulatory region 588977	1084 bp distal