rs27715294 SNP Detail

Summary

• ID
  rs27715294
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:11705824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTCCTTT AAGGACAGAG
  GGAGCTTATG GGCAATGGAT GGATGGTGTT ACTGCTACTA CAAACGACAG CCTGATTGAG
  AAGCTAGTTA CTGAGTGTGT GTGTGTGTGT TGTTGTTGTT GTTGAAAATT TTGCTTTCTA
  GGCTTAGGGA CAGTTTAGTG GTTGATTCTT ACATTAAGAA TTCATACCCA TCAAATGAAG
  Y
  ACCAAAGACA ACTGTGTTGA GCGCCCCTGG GCCTGGCTCA TTCTTAATCA TATTGCCATC
  TTTACTGCTC TGATTCCTAG GATCCCGCAA TGACTCTGAA TAATGTCACC ATGCGCCAAG
  GCACTGTGGG CATGCAGCCA CAGCAGCGCT GGAGTATCCC TGCTGATGCC AGGCATCTGA
  TGGTCCAGAA GGATCCCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37902618	NES08655495	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27715294					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37902618	NES08655495	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:11705824 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14039	CpG island 14039	880 bp distal
Gem	GTP binding protein overexpressed in skeletal muscle	within coordinates
Gm69323	predicted gene, 69323	900 bp upstream
Rr398169	regulatory region 398169	1305 bp downstream
Rr588973	regulatory region 588973	1357 bp distal
Rr588974	regulatory region 588974	1454 bp distal
Rr588975	regulatory region 588975	1363 bp distal
Rr588976	regulatory region 588976	911 bp distal
Rr588977	regulatory region 588977	410 bp distal
Tssr36493	transcription start site region 36493	1370 bp downstream