rs27715299 SNP Detail

Summary

• ID
  rs27715299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:11704760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCAAGTA AGGGGCCATG
  GCTGAGGGGC AGTCCCAGTG GGAGCCTCTG TGGGAAGGGG CGTTCCTGGT CTCCGAACTT
  TTTAAGTTAG GAAGGCAGCC AGTCCCTAGA CTCCCTAGGT CTGTACCGGG GGTTCTGCCG
  TGGGAGAAAG AAGTTCAGGC GCAAAGGATG CGCTTCTGAT GGGGGTTTCT AAATTCAATT
  Y
  CGGAGGAGTG TCACCTTACA GATTAGGTGG CCAGGCGGCA GACTTCAAGG TCTGCTGTCG
  CAAGTCTGTC AACCCAGGGA CTGTTTTTAA GACTTAAAAA GAAACCGGCT GGTTCTGGAT
  CGTGGCATAG GTGTGATGTA TGGAGTAGGG TGTGTGAGCT GAGCGTGATC CTTGCGCTCA
  CGCGGGGAGC TTGCTGAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37902623	NES08655490	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27715299					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37902623	NES08655490	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:11704760 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14039	CpG island 14039	within coordinates
Gem	GTP binding protein overexpressed in skeletal muscle	within coordinates
Gm69323	predicted gene, 69323	within coordinates
Rr398169	regulatory region 398169	241 bp downstream
Rr588973	regulatory region 588973	293 bp distal
Rr588974	regulatory region 588974	390 bp distal
Rr588975	regulatory region 588975	299 bp distal
Rr588976	regulatory region 588976	within coordinates
Rr588977	regulatory region 588977	154 bp proximal
Tssr36493	transcription start site region 36493	306 bp downstream