rs27715302 SNP Detail

Summary

• ID
  rs27715302
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:11703952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCTGAGA TGCGCTGATT
  GGGGTGTGAT TAAATTTCTG ATGGAGGAGA TTCAGCATTG TGGCCAAAAC AGGGGGATGG
  CAGTGTTTAG CACAAGCTGC TTGGAGCCAA CCTGCCCCTT TTCAAGATCC CCTACTCTTT
  CCTCCGACTC TTCTCTTTTG GATCTCTTCC AGAAGAAGGA AACAAAGCAG TATGTCCCAA
  K
  TCAGAGATAA GAAGTCAGGA AGCAGGAAGG GCCTGGTTGC TTCTCAGAGC ATGCTCTGAA
  GGTGGTCTGT CCACTCAGGG TGGCTGTAGC CTCATCCTGG AGGCCGGAGT CCCGCTCACT
  CAGACGGATC TGTTTTCTTG GCAAAGCTGG ACTCGCGGCT TGGGCCTGTT TCTTTCCTCA
  TCCTTTATTC AGACAGCTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37902626	NES08655487	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27715302					SNP	G	G	G	G	G	G	T	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37902626	NES08655487	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:11703952 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14039	CpG island 14039	98 bp proximal
Gem	GTP binding protein overexpressed in skeletal muscle	505 bp upstream
Gm69323	predicted gene, 69323	within coordinates
Rr398169	regulatory region 398169	266 bp upstream
Rr588973	regulatory region 588973	15 bp proximal
Rr588974	regulatory region 588974	397 bp proximal
Rr588975	regulatory region 588975	488 bp proximal
Rr588976	regulatory region 588976	516 bp proximal
Rr588977	regulatory region 588977	962 bp proximal
Tssr36493	transcription start site region 36493	487 bp upstream