rs27715309 SNP Detail

Summary

• ID
  rs27715309
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:11703052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAA AAACGTGGCT GGTGAAGAGC
  Y
  GTATCCAGAG CTTTATGGTA CCCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37902633	NES08655480	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	T	C	T	C	T	T	C	C	T
ss45644249	mCV23761817	ABI	CRAMUS_MOUSE	f	SNP		C	T
ss146016540	ENSMUSSNP2863693	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27715309					SNP	C	C	T	C	C	T	C	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37902633	NES08655480	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:11703052 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14039	CpG island 14039	998 bp proximal
Gem	GTP binding protein overexpressed in skeletal muscle	1405 bp upstream
Gm69323	predicted gene, 69323	134 bp downstream
Rr398169	regulatory region 398169	1166 bp upstream
Rr588973	regulatory region 588973	915 bp proximal
Rr588974	regulatory region 588974	1297 bp proximal
Rr588975	regulatory region 588975	1388 bp proximal
Rr588976	regulatory region 588976	1416 bp proximal
Rr588977	regulatory region 588977	1862 bp proximal
Tssr36493	transcription start site region 36493	1387 bp upstream