rs27715311 SNP Detail

Summary

• ID
  rs27715311
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:11702829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGA ACAGTCGCCA GAGCAATAGA
  Y
  CTGGGAGGAA ATGTGGATAT CTGCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37902635	NES08655478	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	C		C	C	T	T	T	C	C	T
ss45607135	mCV23761824	ABI	CRAMUS_MOUSE	f	SNP		T					C
ss146016531	ENSMUSSNP2257937	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27715311					SNP	C	T	C	C	T	C	C	C	C	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37902635	NES08655478	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:11702829 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14039	CpG island 14039	1221 bp proximal
Gem	GTP binding protein overexpressed in skeletal muscle	1628 bp upstream
Gm69323	predicted gene, 69323	357 bp downstream
Rr398169	regulatory region 398169	1389 bp upstream
Rr588973	regulatory region 588973	1138 bp proximal
Rr588974	regulatory region 588974	1520 bp proximal
Rr588975	regulatory region 588975	1611 bp proximal
Rr588976	regulatory region 588976	1639 bp proximal
Tssr36493	transcription start site region 36493	1610 bp upstream