rs27715312 SNP Detail

Summary

• ID
  rs27715312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:11702810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGCAGCA CGTTCCCACT
  GAGCAATCTT CACAGCTCCC CAATGTGAGC TTCTTGCTAC TCCTTTTTTA TTTTTTTAAA
  TTTATTTTAA ATTATGTGCC ATTACCCCAT CCCCCAATGT GAGATTCTTA TCAGTGTGAA
  GAAGTAGGAT TAAGAGATGG TGTGATTTGC TTACAGACAC CACAGTGTTT CTGTTGAGAA
  Y
  AGTCGCCAGA GCAATAGACC TGGGAGGAAA TGTGGATATC TGCGTGGAAA TGCCTCTCCT
  CAGAGACGTA TTCACAGTTG GGTAGTTGTC TCCCTGCCCC TCCTTCCTTC TCCATCATCT
  CCCTCATTGT TTCCATCTTT CTTCTCCCCC CCCCCCCCAG TCCTTTTTCC TCATTTTCTT
  TCTACATCCG TGTCCCTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37902636	NES08655477	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27715312					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37902636	NES08655477	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:11702810 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14039	CpG island 14039	1240 bp proximal
Gem	GTP binding protein overexpressed in skeletal muscle	1647 bp upstream
Gm69323	predicted gene, 69323	376 bp downstream
Rr398169	regulatory region 398169	1408 bp upstream
Rr588973	regulatory region 588973	1157 bp proximal
Rr588974	regulatory region 588974	1539 bp proximal
Rr588975	regulatory region 588975	1630 bp proximal
Rr588976	regulatory region 588976	1658 bp proximal
Tssr36493	transcription start site region 36493	1629 bp upstream