rs27715314 SNP Detail

Summary

• ID
  rs27715314
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:11702770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAA GAAGTAGGAT TAAGAGATGG
  Y
  GTGATTTGCT TACAGACACC ACAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37902638	NES08655475	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	C	T		C	T	C	C	C	T	T	C
ss45662186	mCV23761825	ABI	CRAMUS_MOUSE	f	SNP			C					T
ss146016527	ENSMUSSNP833627	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27715314					SNP	T	T	C	T	T	C	T	T	C	T	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37902638	NES08655475	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:11702770 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14039	CpG island 14039	1280 bp proximal
Gem	GTP binding protein overexpressed in skeletal muscle	1687 bp upstream
Gm69323	predicted gene, 69323	416 bp downstream
Rr398169	regulatory region 398169	1448 bp upstream
Rr588973	regulatory region 588973	1197 bp proximal
Rr588974	regulatory region 588974	1579 bp proximal
Rr588975	regulatory region 588975	1670 bp proximal
Rr588976	regulatory region 588976	1698 bp proximal
Tssr36493	transcription start site region 36493	1669 bp upstream