rs27720813 SNP Detail

Summary

• ID
  rs27720813
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3557941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTTTTT GGAATTTTAT
  AAAAAAAAAA CTTAATTGAA TTATCTAGAT TATCTTTAAA AGTTTCCAAG AAATTCAAGA
  ATCTGAATTC TTGTTCTTTT GGATTCAAGT TCTTTTGTCC TTTCTCTCTG TTAGGTCTCC
  TAAGCAATAG CCTCCTTAAA ACTACAAACA TAAGAATGAA CAATTAAGAT TCCATGACAA
  R
  TTTATAAGAT TCAAAGATAT TTTTATTATC TTTATCTGAA ATTTATATGA AAACAAATCT
  TTCAAAATAT AAACTTAGAG AAACTGAGTC AATGCTTTGT TTTTACATTA GAATTTTAGT
  TATTCTTGCA TTAAAATATT ACACTGACTA TTCTTAATTT AGCACAGCTC TATATAATTA
  CAATCTGTAG TTCTGTGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37876045	NES08671410	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27720813					SNP	A	A	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37876045	NES08671410	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3557941 () rs orientation: forward

Symbol	Name	Function Class
B230117O15Rik	RIKEN cDNA B230117O15 gene	1716 bp upstream
Tmem68	transmembrane protein 68	within coordinates