rs27720820 SNP Detail

Summary

• ID
  rs27720820
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3557036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTTGTTTT TTTTTTCAAT
  TAAATAAACT AATTTTTCTT CAACCTATAT ATGAAGCTAC CTAAATAGAA TCTTTAGGAA
  TTCACAAACT ACGAGTAGTA CTTGGTACGT ATAAAAGTCT GTCCATACAA ATGACCTTTA
  CATATTTTCT GATGATATTT TATGAACTAC AACTCAATTC CCACTTTAGT TCCTTTTAGT
  R
  TGTCCAGTTT AGTTTTTAAA TTATGCTGGG GGGAGGGATA CTGTTGGGAA TCATACTCAA
  AGCCTGGCAC ATGCTAAGCA AATACTCTAC CACTGAGTTA CAGACTCAAC CAAGCAGTCC
  CTTTTTGAAT GGAGCTAGTC TTACATTCGG AGTTTCAAGT GTTTTCTCAT CGTTTATGGA
  ACGTTGGCTT AGTCCATTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37876052	NES08671483	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	G	A	A	A	A		A	A	G	A
ss145941530	ENSMUSSNP7127384	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27720820					SNP	A	A	G	A	A	G	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37876052	NES08671483	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3557036 () rs orientation: forward

Symbol	Name	Function Class
B230117O15Rik	RIKEN cDNA B230117O15 gene	811 bp upstream
Tmem68	transmembrane protein 68	within coordinates