rs27720822 SNP Detail

Summary

• ID
  rs27720822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3556931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGAAAAC TGGAAAGAAG
  TAATTACCTT TATCTCAAAA GCTTTTATGG ATAAAGTATA CTAGCATAAA TAAATAATTG
  CTAAATACAA TGTTCCTTTC TTTTACGTTT GTTTTTTTTT TCAATTAAAT AAACTAATTT
  TTCTTCAACC TATATATGAA GCTACCTAAA TAGAATCTTT AGGAATTCAC AAACTACGAG
  Y
  AGTACTTGGT ACGTATAAAA GTCTGTCCAT ACAAATGACC TTTACATATT TTCTGATGAT
  ATTTTATGAA CTACAACTCA ATTCCCACTT TAGTTCCTTT TAGTATGTCC AGTTTAGTTT
  TTAAATTATG CTGGGGGGAG GGATACTGTT GGGAATCATA CTCAAAGCCT GGCACATGCT
  AAGCAAATAC TCTACCACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37876054	NES08671481	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T	T	C	T
ss145941524	ENSMUSSNP3848283	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27720822					SNP	T	C	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37876054	NES08671481	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3556931 () rs orientation: forward

Symbol	Name	Function Class
B230117O15Rik	RIKEN cDNA B230117O15 gene	706 bp upstream
Tmem68	transmembrane protein 68	within coordinates