rs27720825 SNP Detail

Summary

• ID
  rs27720825
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3555849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACTGAACA AAATGTTTCA
  AAGATAAAAC TACATATATG TGTATGCATA TATATATTTT ATAAGCAGGG TTTTCGATCA
  TGATAGTCTA AATCTTTTTC ATTTAGTTTT AGAGACTAGA AAACACAAGG ATAAACTTCA
  TAAAAATGCA TCCTCACATT GAACTAGCTG ATCACTTGCT GTCTCTCTCC TCCTACCACA
  R
  GAAAGCCTTC TACTACATTC AGGGACACCT AATACATGTT TCGCTCACTG CTGTATCCCT
  CACACTTAGA AAAGTACTTG GAATAGATAA GATAAAAGAG TTATGGATAA ACTAAAGAGA
  GAATGGATAC ATAACAGGAA GACTTCTAAT GAACTATGCT CTGTAAATAC AGAGGTCAGA
  AACAGGCAGC AGTTGTCTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37876057	NES08671494	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27720825					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37876057	NES08671494	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3555849 () rs orientation: forward

Symbol	Name	Function Class
B230117O15Rik	RIKEN cDNA B230117O15 gene	within coordinates
Tmem68	transmembrane protein 68	within coordinates