rs27721401 SNP Detail

Summary

• ID
  rs27721401
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19442766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTTAAGT TCACAGTGAA
  TTATAAATCA CTGATAATAT CTTAAGGTTT CTTCGAAGAA AAACACACAC ACACACACAC
  ACACACACAC ACACAAATGG TGGGTAGGAA GCCTAGAAAT AGAAACGGAT AAGTCCCATG
  GAGCTAAAAC TGTAGAGGTA CTAAAGATAA ATTTTATCAA CTTCACAATT GGGTTCCACA
  W
  TTGGAAATGC TAAAAAAAAA GAAAAAAAAG AAAAAAAAAT CAGTTCCCTG GAACCAACAC
  CCATCAATTC GGTTATGTTT TGAATAAAAG TGGAATTTCC CACAACTCAA TTCAGATCTC
  CAGAATCTTT ACACAAACAT TTAATACAAT TTTTAGGCAG TACAGGATTT CTCATCATCT
  AAACTGAAAC CATTTCTACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37879341	NES08627623	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27721401					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37879341	NES08627623	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19442766 () rs orientation: forward

Symbol	Name	Function Class
Cngb3	cyclic nucleotide gated channel beta 3	within coordinates
D4Dcr5	DNA Segment, Chr 4, Derry C. Roopenian 5	639 bp distal
Rr589384	regulatory region 589384	725 bp distal
Rr589385	regulatory region 589385	1368 bp distal