rs27727107 SNP Detail

Summary

• ID
  rs27727107
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:15149833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAG AGAGTGAGTT TGCAACTCTG
  S
  CTGAACGTTG GACTGTGTGT CACTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37889729	NES08640085	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	C	G	G	G	G	G	G	G	G	G	G	G
ss146047859	ENSMUSSNP6022245	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27727107					SNP	C	C	G	G	C	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37889729	NES08640085	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:15149833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14054	CpG island 14054	564 bp distal
Necab1	N-terminal EF-hand calcium binding protein 1	39 bp upstream
Rr100616	regulatory region 100616	32 bp distal
Tssr40968	transcription start site region 40968	881 bp upstream
Tssr40969	transcription start site region 40969	861 bp upstream
Tssr40970	transcription start site region 40970	824 bp upstream
Tssr40971	transcription start site region 40971	788 bp upstream
Tssr40972	transcription start site region 40972	763 bp upstream
Tssr40973	transcription start site region 40973	60 bp upstream