rs27727110 SNP Detail

Summary

• ID
  rs27727110
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:15149717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATAGTTCCA CTGCTTGCAC ACTTGGCACT ATCAGGTGTA
  GGGAGGGAGA GGCAAGCCCG GCACAACACA GACAAAATGT AGGGAGATAA CTTGCCTTGC
  R
  CCAGTCGTCC TGGCCATGAG CCTTCTTCCA ACACCATGGA TTCTGGCGTT TCCAACCTCC
  CTACCTCCCG GCTGCTCTGA ATCTACTGTT TACAGAGAGT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37889732	NES08640082	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27727110					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37889732	NES08640082	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:15149717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14054	CpG island 14054	448 bp distal
Necab1	N-terminal EF-hand calcium binding protein 1	within coordinates
Rr100616	regulatory region 100616	within coordinates
Tssr40968	transcription start site region 40968	765 bp upstream
Tssr40969	transcription start site region 40969	745 bp upstream
Tssr40970	transcription start site region 40970	708 bp upstream
Tssr40971	transcription start site region 40971	672 bp upstream
Tssr40972	transcription start site region 40972	647 bp upstream
Tssr40973	transcription start site region 40973	38 bp downstream