rs27727111 SNP Detail

Summary

• ID
  rs27727111
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:15149533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCC ATCTGCCTTA GTTGCTTTTT
  K
  ATCTTGTGGT GTAGCAAATT GCTAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37889733	NES08640081	PERLEGEN	MM_PANEL2	f	SNP	G		T	G	G	T	T	T	T	T	T		T	T	T	T		T
ss146047827	ENSMUSSNP6725231	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T
ss321047417	CHEV_4_15076680	CHEVERUD	SCREENING_POP	f	SNP												T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27727111					SNP	G	G	T	G	G	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37889733	NES08640081	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:15149533 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14054	CpG island 14054	264 bp distal
Necab1	N-terminal EF-hand calcium binding protein 1	within coordinates
Rr100616	regulatory region 100616	within coordinates
Tssr40968	transcription start site region 40968	581 bp upstream
Tssr40969	transcription start site region 40969	561 bp upstream
Tssr40970	transcription start site region 40970	524 bp upstream
Tssr40971	transcription start site region 40971	488 bp upstream
Tssr40972	transcription start site region 40972	463 bp upstream
Tssr40973	transcription start site region 40973	222 bp downstream