rs27727117 SNP Detail

Summary

• ID
  rs27727117
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:15148595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGCTGGGA GTAGCTGGAG
  GGGCATCACA ATGTCTAAGG CTTCCGTCAG CGCTCCCAGC ACAAGGGAGA GAGAGTGCCT
  GCCAGTAAAT TGGGCAGCAG GGATGAGACC GGAATCAAGT CCTACACTGC TCAATGGGAG
  ACTCTCCATT CCGGGCAGAA GCCCTAGGTT CTGGGAAGTC GAACTTTGGG GGCTCCTTAA
  M
  GCTTATAATC AAAGCTGCAG GTCTGGGACA GCTCTTTACA AGTTGGGTGG CAGTCCTTTC
  TCTTGCATTT ATTTGCCTAG GGTCCTCTGG GGAACAGCAG ATAGGAGATA GTTTGAGTGG
  AGGTCTGATA GCAATGCCAG CAGCCAACCG CTGCTCCTGA CCCCTCCCCT CTCACAGAGG
  TGATGCCTAA TGCGCCCACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37889739	NES08640075	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	A	C	A	A	A	A		A	A	A		A
ss146047808	ENSMUSSNP154495	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A					A
ss321047410	CHEV_4_15075742	CHEVERUD	SCREENING_POP	f	SNP											A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27727117					SNP	C	C	A	C	A	C	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37889739	NES08640075	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:15148595 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14054	CpG island 14054	181 bp proximal
Necab1	N-terminal EF-hand calcium binding protein 1	within coordinates
Rr100616	regulatory region 100616	within coordinates
Tssr40968	transcription start site region 40968	346 bp downstream
Tssr40969	transcription start site region 40969	366 bp downstream
Tssr40970	transcription start site region 40970	382 bp downstream
Tssr40971	transcription start site region 40971	416 bp downstream
Tssr40972	transcription start site region 40972	456 bp downstream
Tssr40973	transcription start site region 40973	1160 bp downstream