rs27727120 SNP Detail

Summary

• ID
  rs27727120
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:15148042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCATCAT GCTAAAAAAG
  GAGCGGCTAG AACTGTCCCC ACTGAGCAAG CCAGACACTA CCTGGGGGAA CAGAGTGAAT
  TTTACATGTG AACAGCAGCT AGAAGAGCCA GAACCCAGAA GGCAAGCAAC CCAGGAACAG
  GAAAGCCAGG AAACAAAACA AGGCAGCCGG GTGAGAAACA AACATTAGGG ACAAAGCGAA
  S
  CGGAATCTAG GAGCAAATTA AATCTAAAAC TGAGAGAGAA AGAGGGGGGG GGGGAGAGAG
  ATTACAGCAT AAGGAGACAA AATAGCACGG AAAGAATGGT CAGGCTAGAG ATGCGAAGCA
  AGGAAGTCAA TTCCCAAGCA AGGAATGGGA CCATAGGGAA AACCATCAAA AGCTAGAAGA
  GAAGGTTAAT GATAGTAATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37889746	NES08640068	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27727120					SNP	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37889746	NES08640068	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:15148042 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14054	CpG island 14054	734 bp proximal
Necab1	N-terminal EF-hand calcium binding protein 1	within coordinates
Rr100616	regulatory region 100616	within coordinates
Tssr40968	transcription start site region 40968	899 bp downstream
Tssr40969	transcription start site region 40969	919 bp downstream
Tssr40970	transcription start site region 40970	935 bp downstream
Tssr40971	transcription start site region 40971	969 bp downstream
Tssr40972	transcription start site region 40972	1009 bp downstream
Tssr40973	transcription start site region 40973	1713 bp downstream