rs27727126 SNP Detail

Summary

• ID
  rs27727126
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:15147590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAAAAGA AAAAAAAAAA
  ACCTACAACA ATGTGTTGCA GTAAAAAGTG GAAATCATGT TTTCATGGGG AGAAAATGGT
  TGGCCCCCAA AGCCTGAATC CTGTGTTGGC ACTGCATGGT GATGTGGGGA GAAGGCTGCC
  TGGAGGTGGG GTTGAAGCTT CGATTAAGTC TTACACAAGT TTTAATTATT GATATAAATT
  Y
  CTCAGCCAAT TTTTTAAAAA GTCTAGATAA TTCCTTCACG ACAAATCAAA GACTCCTTGC
  CCCTCCCCCA TTATCTTCAA AATCCCTGAC TGGCCATTAT GATAGTTGAT GTCCTCACAT
  TTTCATTTTT CATACTCAAG TGTATTTAGC CTCTGGCCCA CCTCCTTCAT GCTTGGACTT
  TAATAAGGAG TGATGGCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss37889752	NES08640062	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T		T		T
ss321047394	CHEV_4_15074737	CHEVERUD	SCREENING_POP	f	SNP						T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs27727126					SNP	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37889752	NES08640062	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:15147590 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14054	CpG island 14054	1186 bp proximal
Necab1	N-terminal EF-hand calcium binding protein 1	within coordinates
Rr97381	regulatory region 97381	1580 bp distal
Rr100616	regulatory region 100616	10 bp proximal
Tssr40968	transcription start site region 40968	1351 bp downstream
Tssr40969	transcription start site region 40969	1371 bp downstream
Tssr40970	transcription start site region 40970	1387 bp downstream
Tssr40971	transcription start site region 40971	1421 bp downstream
Tssr40972	transcription start site region 40972	1461 bp downstream