rs27727128 SNP Detail

Summary

• ID
  rs27727128
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:15147320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAAAAGC ACGGGTAGTG
  CTCAGTGTCC TCAGAGGGCA GAGCACAGAT TAGGCACAAA AGGACAGAGG TCCCACTTGA
  CCTCAGGACT AACTTCTTGG CAGATTGGTT TTCTTCCTCA TAATAGTCTG GATGAGCAAG
  GTCCTGATTC CCTCCTGATC CTGGGGATTG CACACTCATG TGTGCAGCCC TGTCTTTACA
  W
  TGACCCAACC TAGTTCCTGG AGGCAGGGCA TGAAGAAATA ATTAGAGCAT AGACTGAACC
  ATTGCAGAGA TTTAAAAGAA AAAAAAAAAA CCTACAACAA TGTGTTGCAG TAAAAAGTGG
  AAATCATGTT TTCATGGGGA GAAAATGGTT GGCCCCCAAA GCCTGAATCC TGTGTTGGCA
  CTGCATGGTG ATGTGGGGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37889754	NES08640060	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27727128					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37889754	NES08640060	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:15147320 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14054	CpG island 14054	1456 bp proximal
Necab1	N-terminal EF-hand calcium binding protein 1	within coordinates
Rr97381	regulatory region 97381	1310 bp distal
Rr100616	regulatory region 100616	280 bp proximal
Tssr40968	transcription start site region 40968	1621 bp downstream
Tssr40969	transcription start site region 40969	1641 bp downstream
Tssr40970	transcription start site region 40970	1657 bp downstream
Tssr40971	transcription start site region 40971	1691 bp downstream
Tssr40972	transcription start site region 40972	1731 bp downstream