rs27727130 SNP Detail

Summary

• ID
  rs27727130
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:15147223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCT CAGGACTAAC TTCTTGGCAG
  V
  TTGGTTTTCT TCCTCATAAT AGTCT                                      
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37889756	NES08640057	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A	A	A	G		A
ss146047781	ENSMUSSNP1282305	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321047390	CHEV_4_15074370	CHEVERUD	SCREENING_POP	f	SNP							A					C
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27727130					SNP	A	A	A	A	A	A	A	A	A	A	G	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37889756	NES08640057	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:15147223 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14054	CpG island 14054	1553 bp proximal
Necab1	N-terminal EF-hand calcium binding protein 1	within coordinates
Rr97381	regulatory region 97381	1213 bp distal
Rr100616	regulatory region 100616	377 bp proximal
Tssr40968	transcription start site region 40968	1718 bp downstream
Tssr40969	transcription start site region 40969	1738 bp downstream
Tssr40970	transcription start site region 40970	1754 bp downstream
Tssr40971	transcription start site region 40971	1788 bp downstream
Tssr40972	transcription start site region 40972	1828 bp downstream