rs27727135 SNP Detail

Summary

• ID
  rs27727135
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:15147031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTG TTGAACACGT GAGCTTAGAA
  Y
  GGTAAGTCTG TCGGGTGGCT TTCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37889761	NES08640048	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	T	T	T	T	T		T	T	T	T		T
ss146047766	ENSMUSSNP6018955	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T
ss321047386	CHEV_4_15074178	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27727135					SNP	C	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37889761	NES08640048	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:15147031 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14054	CpG island 14054	1745 bp proximal
Necab1	N-terminal EF-hand calcium binding protein 1	within coordinates
Rr97381	regulatory region 97381	1021 bp distal
Rr100616	regulatory region 100616	569 bp proximal
Tssr40968	transcription start site region 40968	1910 bp downstream
Tssr40969	transcription start site region 40969	1930 bp downstream
Tssr40970	transcription start site region 40970	1946 bp downstream
Tssr40971	transcription start site region 40971	1980 bp downstream