rs27727137 SNP Detail

Summary

• ID
  rs27727137
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:15146888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGGAATG TGTAAACAAC
  ATATTTTCTA TCCAAGAAAA AAGAACCCAA CTGCAGTTAA TCTTTTTTTA AAGCTATGTT
  TCAAAGAAAA ACAGGCATGT TAACGCCTCT CTTGTGGAAT CAGGTTTTTT GGTTTTTGTT
  TTTCTGGGTT TTTTTGTTTT TGTATTTTCC AATTCTGGAA CTAGACTTAA GAAGGTAAGG
  S
  AGCCAGCCCT GTTTATAGAT GAAAGCTCCA TCAGGACAGG GAACTTACAT TAAAAGAACT
  TGGGAACAAC TGCACCTACA TAATAAGATG AGATTTAAAA TTTTGCTTTT AATAACCTGC
  TGTTGAACAC GTGAGCTTAG AATGGTAAGT CTGTCGGGTG GCTTTCTTTG CTCTTTCATA
  GTCTCTATAC ATTCCTCAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37889763	NES08640044	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	C	G	G	G	G	G		G	G	G	C		G
ss146047758	ENSMUSSNP1795248	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					G
ss321047384	CHEV_4_15074035	CHEVERUD	SCREENING_POP	f	SNP										G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27727137					SNP	C	G	G	C	G	G	G	G	G	G	G	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37889763	NES08640044	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:15146888 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14054	CpG island 14054	1888 bp proximal
Necab1	N-terminal EF-hand calcium binding protein 1	within coordinates
Rr97381	regulatory region 97381	878 bp distal
Rr100616	regulatory region 100616	712 bp proximal