rs27729980 SNP Detail

Summary

• ID
  rs27729980
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12114130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGGAGCAT CGGATTGCCT
  CTTGAAAACT TTTTGCCCCC TTTACGAGGG GATTTCCTAC TTTAATTTTT ATTTTCGAAG
  CCTCAAGCCA GGACAGCTGG AGAGTACAAA CTCCAAGAGC GGGCCATTTT GTTTTTGAGA
  GCCTTTTGTC TTCAGGCTTT TGCAGTCCAG TACAAGTCGT CCCGCACTCG GGTCCCGGCT
  M
  GGAGCCTCCC TGCTCCTGCC TTCTCCGGGC GTATCTAGTG CCACCTGTGC GCCGCGGAGA
  GTGCCATAGC TCCTCGGAGC CCCTTTTGTC CTGCAGTAGG CCATGTTTTC TGAAGTCCTC
  CAGGCGGGGC TCGGGGTCGT GTGGGGTGGG GAGATGAACG CTGCAGCCAG CAGCTACCCC
  ATGGCCTCCT TATACGTGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ
ss37900908	NES08724279	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ
rs27729980					SNP	A	A	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37900908	NES08724279	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12114130 () rs orientation: forward

Symbol	Name	Function Class
Gm11839	predicted gene 11839	154 bp upstream
Rr589052	regulatory region 589052	683 bp distal
Rr589053	regulatory region 589053	816 bp distal
Tssr36503	transcription start site region 36503	765 bp downstream
Tssr36504	transcription start site region 36504	666 bp downstream