rs27729987 SNP Detail

Summary

• ID
  rs27729987
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12113442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGAGAAT CATACAGGTG
  CGTGCTGCTG GTCCTCCAAA CGCAAGGGGA CGCTGTGACA CCTTGAGGGC GGCTCCAGGT
  CACTCTGGCA TGACTGCCCC ACCTTGGGCC CCCGGGGCAG AGTGGGCGGG CAGGACTGCG
  CCCAGGTCAG GAGGTGCCCT TCGGCCAGCA GTTCCTGGGG CTGGAGGGTA TAAATGGAGC
  R
  GTGGCTGCTG CAGCCATCAC TCTCGGCCCC AGGTCACAGC AGTCAGTGTT GCGTTTGGGC
  TCAGCAAGCC TGAAGCAGAA AAAGAGGAAG AAGAGGACGG AGAAGGAAAA GAAGGAGGAG
  TAGGAGAAGA AGGAAAAGAA GAGAAGAGAC GAGACGAGAA GATGGGAAAA AAAAGCAAAA
  GGGAACAAAG AAGAAAAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ
ss37900915	NES08641813	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ
rs27729987					SNP	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37900915	NES08641813	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12113442 () rs orientation: forward

Symbol	Name	Function Class
Gm11839	predicted gene 11839	842 bp upstream
Rr376110	regulatory region 376110	1858 bp downstream
Rr589052	regulatory region 589052	within coordinates
Rr589053	regulatory region 589053	128 bp distal
Tssr36503	transcription start site region 36503	77 bp downstream
Tssr36504	transcription start site region 36504	16 bp upstream