rs27729989 SNP Detail

Summary

• ID
  rs27729989
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12113283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAAACAGTA TACCTGCGTG TGGGTCTTGG GGAGGACATG
  GCTCAATCCA TACACTGCAG AAAGAGAATC ATACAGGTGC GTGCTGCTGG TCCTCCAAAC
  S
  CAAGGGGACG CTGTGACACC TTGAGGGCGG CTCCAGGTCA CTCTGGCATG ACTGCCCCAC
  CTTGGGCCCC CGGGGCAGAG TGGGCGGGCA GGACTGCGCC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37900917	NES08641811	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27729989					SNP	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37900917	NES08641811	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12113283 () rs orientation: forward

Symbol	Name	Function Class
Gm11839	predicted gene 11839	1001 bp upstream
Rr376110	regulatory region 376110	1699 bp downstream
Rr589052	regulatory region 589052	within coordinates
Rr589053	regulatory region 589053	within coordinates
Tssr36503	transcription start site region 36503	73 bp upstream
Tssr36504	transcription start site region 36504	175 bp upstream