rs27729993 SNP Detail

Summary

• ID
  rs27729993
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12112887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTGTTGTG CCATGAGTCA CCTCGAGATG CCTTGTAAGG
  ACATCACTAG AGGTAGCTCC CTTATACAAG AACCATGAGC CCAAATACAC CTTTCTTCTC
  M
  TCTTCCTCCT CCTTTTGCAC AAACTAAGTT GTAGGCGTGC CACCAGAACA AAACAGGAGA
  GGCCAGTCGC GTTTTGTTTT ATAAAAGCTT TGCCAAATTT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37900921	NES08641807	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27729993					SNP	C	C	C	C	C	C	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37900921	NES08641807	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12112887 () rs orientation: forward

Symbol	Name	Function Class
Gm11839	predicted gene 11839	1397 bp upstream
Rr376110	regulatory region 376110	1303 bp downstream
Rr589052	regulatory region 589052	294 bp proximal
Rr589053	regulatory region 589053	390 bp proximal
Tssr36503	transcription start site region 36503	469 bp upstream
Tssr36504	transcription start site region 36504	571 bp upstream