rs27729995 SNP Detail

Summary

• ID
  rs27729995
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12112565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAATGAATT GATTGATTAA ATACTTACAT TTCCTCAATT
  GTTTACTTCA GCCAGTAGAC GAGTATCTCT CTACCTTTTG CTAATTTCTG GTTTGAGTGG
  M
  TATACGGCTA GAAAAAAAAT GGTCCCTGGC ACTTATGGAG TAAGGAAATA GAGCTATAAC
  TCCACATATT TAGTCTCATG AGATAACATG ATCTTCAAAT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss37900923	NES08641805	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs27729995					SNP	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37900923	NES08641805	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12112565 () rs orientation: forward

Symbol	Name	Function Class
Gm11839	predicted gene 11839	1719 bp upstream
Rr376110	regulatory region 376110	981 bp downstream
Rr589052	regulatory region 589052	616 bp proximal
Rr589053	regulatory region 589053	712 bp proximal
Tssr36503	transcription start site region 36503	791 bp upstream
Tssr36504	transcription start site region 36504	893 bp upstream