rs27729996 SNP Detail

Summary

• ID
  rs27729996
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12112546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTGATTAG CCATTTATTG GAATGAATTG ATTGATTAAA
  TACTTACATT TCCTCAATTG TTTACTTCAG CCAGTAGACG AGTATCTCTC TACCTTTTGC
  W
  AATTTCTGGT TTGAGTGGAT ATACGGCTAG AAAAAAAATG GTCCCTGGCA CTTATGGAGT
  AAGGAAATAG AGCTATAACT CCACATATTT AGTCTCATGA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37900924	NES08641804	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27729996					SNP	T	T	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37900924	NES08641804	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12112546 () rs orientation: forward

Symbol	Name	Function Class
Gm11839	predicted gene 11839	1738 bp upstream
Rr376110	regulatory region 376110	962 bp downstream
Rr589052	regulatory region 589052	635 bp proximal
Rr589053	regulatory region 589053	731 bp proximal
Tssr36503	transcription start site region 36503	810 bp upstream
Tssr36504	transcription start site region 36504	912 bp upstream